PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918561.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 596aa    MW: 66240.1 Da    PI: 5.7606
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918561.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-085205581854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  XP_010918561.1 520 MFQNflHPYPKDNEKRLLALKSGLTRSQVSNWFINARVR 558
                     5887779******************************88 PP
2BELL64.81.8e-21392461271
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     r e  k k++Ll +l+++d rY+q+ +q+q vis+F+ +++  + ++++ +Al++iS  +++L+++i++ 
  XP_010918561.1 392 RLETDKEKSQLLVMLQMIDCRYNQWLDQIQNVISAFNKATESVTPQLHACFALRTISVIYKNLRERITSM 461
                     6788999************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-21313460IPR006563POX domain
PfamPF075264.9E-29319459IPR006563POX domain
PROSITE profilePS5007111.645499562IPR001356Homeobox domain
SMARTSM003898.9E-6502566IPR001356Homeobox domain
CDDcd000864.77E-11502563No hitNo description
SuperFamilySSF466892.22E-15502571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-26505569IPR009057Homeodomain-like
PfamPF059202.3E-14519558IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MENDVSDTSQ RTTDHDHMDI NAVASNMFSG PFTQSGMIDH DSNEQMMAGN TLYPALPEEV  60
LNSLYITNHG SISNYASRGN ASFEDSVGKT GLREHLLGGS LFATSLAYVL TGSPSLQEDI  120
TGSSVSSTSA LPLDEIRALS SRDRCNTFGP QDVASFSGSK TDASLNGKFG YRWNADESQD  180
LQVPSSGTTS TVHPSYHVIG CSEPGWGSDL STRKSDNLPS YLLPNNALSL RLGSYQPSMM  240
NMFNVPDECS ELSRSELNQV ISKDSKTPDP TELQHSSCLF SPSQNLKVGM ALGLEQTFTN  300
GEELSLCCNP SPFHFPHFLL GSRYLKIAQQ VLAEVASCAK LDDLLGGIGG EARMSFSSSC  360
SSERGIMSVG SDEFTLCSGE TKYQSHIDPQ QRLETDKEKS QLLVMLQMID CRYNQWLDQI  420
QNVISAFNKA TESVTPQLHA CFALRTISVI YKNLRERITS MILLTGQQQS SECTKEQEKT  480
FEASLIQKQW ASQQMRKDQQ SWRPQRGLPE KSVSVLRAWM FQNFLHPYPK DNEKRLLALK  540
SGLTRSQVSN WFINARVRLW KPMIEEMYME FSKQSRNEGA TGTDCQSHQT FSRGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15508565158Homeobox protein Meis1
4xrs_B2e-15508565158Homeobox protein Meis1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120444.10.0homeobox protein ATH1
RefseqXP_029120445.10.0homeobox protein ATH1
TrEMBLA0A2H3ZZH80.0A0A2H3ZZH8_PHODC; uncharacterized protein LOC103721825
STRINGXP_008810401.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-72homeobox gene 1