PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918397.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 373aa    MW: 41827.9 Da    PI: 6.704
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918397.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-191877357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq+  Le ++++  r+psae++++++  l    +++ ++V++WFqN++a++++
  XP_010918397.1 18 SRWSPTKEQIAMLEGFYRQgMRTPSAEQIQQITGMLreygSIEGKNVFYWFQNHKARQRQ 77
                    6*****************99**************************************96 PP
2Wus_type_Homeobox111.35.2e-361879465
  Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +RW+Pt+eQi +Le  y++G+rtP++e+iq+it +L+eyG ie+kNVfyWFQN+kaR+rqkq
     XP_010918397.1 18 SRWSPTKEQIAMLEGFYRQGMRTPSAEQIQQITGMLREYGSIEGKNVFYWFQNHKARQRQKQ 79
                       7***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-61582IPR001356Homeobox domain
SuperFamilySSF466895.99E-121785IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-81877IPR009057Homeodomain-like
PfamPF000464.0E-171877IPR001356Homeobox domain
CDDcd000862.52E-51979No hitNo description
PROSITE profilePS5007110.4951978IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEECKGSASA SSPSLLGSRW SPTKEQIAML EGFYRQGMRT PSAEQIQQIT GMLREYGSIE  60
GKNVFYWFQN HKARQRQKQK EESFAYYSRH LHLPAPQAPA LSPPPPPTCT NVVRGPYYST  120
VPQVGGVGCH QPQFPSIFLP RAMNMNPRPE FQVSQERSPQ ACSNSPHRAY HYDHHATGTD  180
RSDVGHANLN GPHETLQLFP LQPTGIWEER SSGSLNTASA GSESVDDGEE EAMVNKWMYK  240
EIGGNKEWFV LSALYSVLGN VVKRTGMLEI YDKTTDSVDH VKTFKVAMLL WGAADIQRDD  300
PGGPKPEPVD RNGCNDEQST EERLEKSLVK IYLRDLLDIL AYVEKYAHMK EVFANDTPIG  360
SAAVGFNKER HPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120175.11e-172WUSCHEL-related homeobox 5-like
TrEMBLA0A2H3X4421e-115A0A2H3X442_PHODC; WUSCHEL-related homeobox 5-like
STRINGXP_008778011.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-30WUSCHEL related homeobox 2