PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918299.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRF

Protein Properties

Length: 525aa MW: 56293.7 Da PI: 7.5548

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918299.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.4e-25	174	218	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e XP_010918299.1 174 DPEPGRCRRTDGKKWRCSRDAAPDQKYCERHLHRGRPRSRKPVEV 218 79****************************************985 PP
2	QLQ	46.1	1.5e-16	112	144	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT aQ+q+L +Q+l+yK+++a++PvP++Ll++ XP_010918299.1 112 PFTSAQWQELQRQALIYKHIIASVPVPADLLFP 144 8*****************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.4E-8	111	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.3E-12	112	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.13	112	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.724	174	218	IPR014977	WRC domain
Pfam	PF08879	1.1E-20	175	217	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
METGVGLGDK RERKEHEESL GLRFACGSDS TSFAPQKLIR TDGFPFLPSC TTRDGSSVPT 60 STPFLSSGPT LFLNDAYDGG RALQPFPTAF RSPGVGMGVG GGASAAALRA FPFTSAQWQE 120 LQRQALIYKH IIASVPVPAD LLFPSSPSHH LLPNLVVGRG AAGAFNLRFS SNTDPEPGRC 180 RRTDGKKWRC SRDAAPDQKY CERHLHRGRP RSRKPVEVSK TKPITSTAPP PAAVSTNSST 240 IVTTTAATTS ISKPFPSQSS GFFPKDELKF PFQPLEPNKE PRCLDWIKGN NEEMESNLQW 300 ELMHSKTGLS SSSTPILQNY DDQLNSNYTA FLNPDLCSLE EDTMGDHRET PRSFIDAWST 360 ENPAATTKTG NLTSVPTGGE LPLSTLTLSM SGVEEGGDHQ IQMGLGVGDT LVKTYPSGWI 420 ASASPGGPLG EVLRTSNATS PRQGFGADDG RDSGSRRLIN PLSDGFRGSH EASPQESPTR 480 LASSPSGVLQ KAMVSLSDSS SSSSPTFAAA SRSQIALQWM NQTKQ

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

METGVGLGDK RERKEHEESL GLRFACGSDS TSFAPQKLIR TDGFPFLPSC TTRDGSSVPT  60
STPFLSSGPT LFLNDAYDGG RALQPFPTAF RSPGVGMGVG GGASAAALRA FPFTSAQWQE  120
LQRQALIYKH IIASVPVPAD LLFPSSPSHH LLPNLVVGRG AAGAFNLRFS SNTDPEPGRC  180
RRTDGKKWRC SRDAAPDQKY CERHLHRGRP RSRKPVEVSK TKPITSTAPP PAAVSTNSST  240
IVTTTAATTS ISKPFPSQSS GFFPKDELKF PFQPLEPNKE PRCLDWIKGN NEEMESNLQW  300
ELMHSKTGLS SSSTPILQNY DDQLNSNYTA FLNPDLCSLE EDTMGDHRET PRSFIDAWST  360
ENPAATTKTG NLTSVPTGGE LPLSTLTLSM SGVEEGGDHQ IQMGLGVGDT LVKTYPSGWI  420
ASASPGGPLG EVLRTSNATS PRQGFGADDG RDSGSRRLIN PLSDGFRGSH EASPQESPTR  480
LASSPSGVLQ KAMVSLSDSS SSSSPTFAAA SRSQIALQWM NQTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918299.1	0.0	growth-regulating factor 7
TrEMBL	A0A2H3ZCT3	0.0	A0A2H3ZCT3_PHODC; growth-regulating factor 7-like isoform X2
STRING	XP_008811877.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-35	growth-regulating factor 2