PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917942.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 165aa MW: 18297.9 Da PI: 8.7112

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917942.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	217.7	3.7e-67	3	157	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + l++++ +++l++ ++++ ++ XP_010917942.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ--------KLQNHNLGSQDLNMDCGSSSKCNKVSL 89 56789********************************************999998775........456666666666666666665555566 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +++ +p ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+i fgl XP_010917942.1 90 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPHIQFGL 157 6667777777777.....9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.1E-71	6	157	IPR006780	YABBY protein
SuperFamily	SSF47095	3.14E-8	102	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-5	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQKLQNHNLG SQDLNMDCGS SSKCNKVSLM NSMENVQQQT LPIRLPEKRQ RVPSAYNRFI 120 KEEIRRLKAT NPDISHREAF SAAAKNWAHF PHIQFGLSVD GDKQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917942.1	1e-121	protein YABBY 2 isoform X6
Swissprot	Q10FZ7	2e-64	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3XXR9	1e-112	A0A2H3XXR9_PHODC; protein YABBY 2-like isoform X2
STRING	XP_008790352.1	1e-111	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-66	YABBY family protein