PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917438.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 897aa    MW: 100306 Da    PI: 6.5884
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917438.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-166693499
                    SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l+++++r+
  XP_010917438.1  6 QELIAKDLHDISWTFRHIYRGQPKRHLLTTGWSVFVSTKRLVAGDSVLFI--RDEKSQLLLGIRRA 69
                    47999*********************************************..45677789999997 PP
2Auxin_resp123.91.1e-4094176183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldp++W+nS+Wr+L+
  XP_010917438.1  94 AAHAAANNSPFTIFYNPRASPSEFVIPFAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPLQWKNSQWRNLQ 176
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.857170IPR003340B3 DNA binding domain
SMARTSM010190.0044170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-24283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-22297IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-11668No hitNo description
PfamPF023625.4E-14669IPR003340B3 DNA binding domain
PfamPF065071.1E-3594176IPR010525Auxin response factor
PfamPF023095.3E-9778867IPR033389AUX/IAA domain
PROSITE profilePS5174525.983781865IPR000270PB1 domain
SuperFamilySSF542774.97E-8794860No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MQPPAQELIA KDLHDISWTF RHIYRGQPKR HLLTTGWSVF VSTKRLVAGD SVLFIRDEKS  60
QLLLGIRRAN RQQPALSSSV LSSDSMHIGI LAAAAHAAAN NSPFTIFYNP RASPSEFVIP  120
FAKYNKAMYT QVSLGMRFRM MFETEESGVR RYMGTITGIS DLDPLQWKNS QWRNLQVGWD  180
ESTATERRTR VSIWEIEPVA TPFYICPPPF FKPKFSKQPG MLDDKMEIEN TFNRVMPWLG  240
DDFGLKDAQS AVFPGLSLVQ WMAMQQNSQL MAPAAQSTYF PSTAASAMQD GLGTEDPTKI  300
LNFQSHALPS SYLQSSSKLN PQTQQFDKQH QPPLLSSQQP LQPQQQISIH HHHQQQQQPP  360
PLQQNTAHLL PLQQQQQRQE QAELQQQHLQ QQQPRVAANQ ELIDQQQHQP VRSQPLPPTQ  420
LSNQILQPPS SNVQQQGLPK PNTQHQQGAC SPNPGSLQPS SLPQILQVQQ PVDHQNTLFQ  480
QQQQHLQQLM QPQLQLQLLQ KLQQQQLLSQ LGPQLQSQSS QQLTQHNQHF QQQQNLQPQL  540
NGTNILPAQV KQLQQMPAMY DSNHLKPQLP ARAHSTLSEN KAPSCSTSPS TNCHSSSNLL  600
NRVQQGPAVL VGEIGVPHME NLLQELQSKS DVQVKHELHC TKEPTQLPNQ HATVDQLDAS  660
SATSFCVDGS THEGISLPPI LDGDVQVDPR DNLLVGTYSD GLMPDALLSR GLGSGKDIQN  720
LISGYGNQGD VETELSTAAI SSQSFGVPHM PFKPGCSSDA AANESGVLNQ GFWSSQPQRM  780
RTYTKVQKRG AVGRSIDITR YKGYDELRHD LACMFGIEGQ LEDPHRTDWK LVYVDHENDI  840
LLVGDDPWEE FVNCVQSIKI LSAAEVQQMS LDGDLSNIPV QNQAYSGSNN NGDLWRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-942197192388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917437.30.0auxin response factor 16 isoform X1
TrEMBLA0A194YIW10.0A0A194YIW1_SORBI; Auxin response factor
STRINGGRMZM2G160005_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-142auxin response factor 19