PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 46955.7 Da PI: 4.9597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.9 | 8.8e-45 | 36 | 160 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppG+rF+P+d+el+ +yL++k+++++l +v+++v++y+++P +L +k+k+ ++++wyfF++rd+ky++g r+nr+t +gyWkatg +k++++ XP_010917234.1 36 PPGYRFNPRDDELILHYLRRKIANEPLLY-DVFNDVNLYEYHPATLVEKFKHcGDNRWYFFTPRDRKYPNGIRPNRKTVDGYWKATGVEKKIIH- 128 9*************************888.99**************8655554899**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +ge++g++k Lvfy+g+a kg+ktdW+m ey XP_010917234.1 129 DGEQIGVRKALVFYTGKAGKGSKTDWIMYEYI 160 999****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-52 | 33 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.942 | 35 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-24 | 36 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MADSMASNPE SSMDKGNEEE EDIVIDTRQG PDSRFPPGYR FNPRDDELIL HYLRRKIANE 60 PLLYDVFNDV NLYEYHPATL VEKFKHCGDN RWYFFTPRDR KYPNGIRPNR KTVDGYWKAT 120 GVEKKIIHDG EQIGVRKALV FYTGKAGKGS KTDWIMYEYI NQDRSNRPRR PDGTMKLDDW 180 VLCTIQKKRG ADEDTGGEPE EPTQAQQAST SQSREQKQPR ADEENSGEPE GPPKAQQATT 240 SRSTEKPGTS QVQQIPHDGR EVEPLDYQVI HNNNGSHVNY YDMDGHANYN TGSVTQAPSM 300 SLPNDFTGFI SSDDIGDHHP SAQNFQQDIL NPSMRSIDLG YQLGQTPEFG FENQQMISES 360 LYPSPPEDPL DQRFSKNRDI IQIKHINIHS HIYCLSLNSA LDVYAIFEGM IG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 35 | 193 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 35 | 193 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 35 | 193 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 35 | 193 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-50 | 35 | 193 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 35 | 193 | 17 | 170 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917234.1 | 0.0 | NAC domain-containing protein 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15867 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-56 | NAC-like, activated by AP3/PI |