PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916785.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 235aa    MW: 25964.9 Da    PI: 8.4031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916785.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.47.1e-3133122189
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                     aCa+Ck++r+kC+++C lapyfpa+++++f  vhk++G+sn++k+lka ++   re+ +++l++eAe+r  dP +G+++ + +l+ + + 
  XP_010916785.1  33 ACASCKHQRKKCSESCELAPYFPADRTREFGQVHKVYGVSNLTKMLKANDTIPeRERCAETLMWEAEWRNIDPANGCYNEVIRLRDENAM 122
                     7***********************************************977655***************************999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.632134IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-2933123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQRNVPYPPA GPAQAPAAGA GAGVGAGQGG HQACASCKHQ RKKCSESCEL APYFPADRTR  60
EFGQVHKVYG VSNLTKMLKA NDTIPERERC AETLMWEAEW RNIDPANGCY NEVIRLRDEN  120
AMLRRVIGEC IDCSRQPLPQ PYHSPVQHPR RYPANGNDHN NNNNYLIRQA INNNNGNIGG  180
AMHHAEVVPP QHMVNYPPNN GNVINGYHNP HHSHPAIYMH GPGGQGNNGH GTFYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-17291257102LOB family transfactor Ramosa2.1
5ly0_B3e-17291257102LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916785.11e-174LOB domain-containing protein 2-like
TrEMBLA0A2H3XIX71e-104A0A2H3XIX7_PHODC; LOB domain-containing protein 2-like
STRINGXP_008784488.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-24LOB domain-containing protein 2