PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916708.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30836.5 Da    PI: 4.7038
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916708.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.2e-1966118456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV vWFqNrRa++k
  XP_010916708.1  66 KRRLRVDQVKALEKNFEVENKLDPDRKARLAQDLGLQPRQVAVWFQNRRARWK 118
                     4578899*********************************************9 PP
2HD-ZIP_I/II1261.7e-4064156193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE++Fe e+kL+p+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy aL+++y+alk + ++L++++e+L++e+ke
  XP_010916708.1  64 EKKRRLRVDQVKALEKNFEVENKLDPDRKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYGALQARYEALKIDCDALRHDKEKLTAEIKE 156
                     69****************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1960122IPR009057Homeodomain-like
PROSITE profilePS5007116.60160120IPR001356Homeobox domain
SMARTSM003891.3E-1763124IPR001356Homeobox domain
CDDcd000866.49E-1665121No hitNo description
PfamPF000463.8E-1666118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-2072119IPR009057Homeodomain-like
PRINTSPR000318.2E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000318.2E-6100116IPR000047Helix-turn-helix motif
PfamPF021838.0E-17120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKRPSSSDSF GGMEEKEPGL IPISPSMEEQ AKYEGRFQPM LDGMEGVECE DEELCTYGQS  60
ALGEKKRRLR VDQVKALEKN FEVENKLDPD RKARLAQDLG LQPRQVAVWF QNRRARWKTK  120
QLERDYGALQ ARYEALKIDC DALRHDKEKL TAEIKELRAK LVNPAAVTRL KNKDAEERPA  180
LIYKDGASDS DSSVVFNDHE NSPYSGVVLD QDYFMGFKSY SSSSSLFESR ALDQKEYLEE  240
GFLSGEELCS GLFSEEQAPS LSWYCSEPWK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995DRKARLA
2112120RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916708.10.0homeobox-leucine zipper protein HOX4 isoform X2
TrEMBLA0A2H3Y8W41e-169A0A2H3Y8W4_PHODC; homeobox-leucine zipper protein HOX4-like
STRINGXP_008795210.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-60homeobox protein 16