PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27453.9 Da PI: 9.3808 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.4 | 2.1e-24 | 52 | 101 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA ELS+LCda+ ++++fss+gklyey XP_010916111.1 52 KRIENPIQRQSTFYKRRDGLFKKARELSILCDADLLLLLFSSSGKLYEYH 101 79***********************************************6 PP | |||||||
2 | K-box | 31.7 | 6.6e-12 | 119 | 213 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ + + + + e++k++k e L+r +R ++ + + sl L Le +Le +++k+Rs K++ ++ +i++l ++ ++ q+e +L k++ XP_010916111.1 119 TQNKIWRDLHLERNAEMEKVQKLCELLERDLRFMKVDASQHYSLPVLDVLEGNLEAAINKVRSEKDRKIVGEINHLENMVRDRQQERYDLGDKVA 213 56668999999999*************************************************************************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.188 | 44 | 104 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-33 | 44 | 103 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-26 | 46 | 132 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 46 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-23 | 46 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-22 | 53 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-23 | 66 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-23 | 81 | 102 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.917 | 128 | 218 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.4E-11 | 131 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSPFPYLCKF LQVTRALYTS PGVASLVLER GRCICFWCCE KRTMVRGRRE IKRIENPIQR 60 QSTFYKRRDG LFKKARELSI LCDADLLLLL FSSSGKLYEY HTPSVPSAEE LVKRYEVATQ 120 NKIWRDLHLE RNAEMEKVQK LCELLERDLR FMKVDASQHY SLPVLDVLEG NLEAAINKVR 180 SEKDRKIVGE INHLENMVRD RQQERYDLGD KVARAQGLKD MAVPLNRLDL KLGFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010916111.1 | 1e-174 | MADS-box transcription factor 32 | ||||
Swissprot | Q8S151 | 5e-82 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A2H3ZDG5 | 1e-110 | A0A2H3ZDG5_PHODC; MADS-box transcription factor 32-like | ||||
STRING | XP_008812160.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 1e-16 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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