PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916027.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 813aa    MW: 89341.4 Da    PI: 7.1087
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916027.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.6e-25176277199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_010916027.1 176 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDD 267
                     99****************************963.3445679************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_010916027.1 268 GELRLGIRRA 277
                     999****996 PP
2Auxin_resp114.31.1e-37300381182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+stksvF + YnPr+s+seF+++++k++k++ ++vs+G+Rfkm++e+ed++err++G+++g+ d+dp+rWp+SkWr+L
  XP_010916027.1 300 VVNAVSTKSVFPINYNPRSSQSEFIIPYWKFRKSFGCSVSIGTRFKMRIESEDAAERRYTGLITGIGDVDPIRWPGSKWRCL 381
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-42168291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-43169288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.52E-23174276No hitNo description
PfamPF023629.0E-23176277IPR003340B3 DNA binding domain
SMARTSM010191.5E-23176278IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38176278IPR003340B3 DNA binding domain
PfamPF065072.6E-32301381IPR010525Auxin response factor
PROSITE profilePS5174516.888722804IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MGIDLNTIEE EEEGEAAEHP TALQPTQTHH HHHHHHHHHR QYPHPPLPAA ASGGGGSSSS  60
GASPPVCLEL WHACAGPLIS LPRKGSVVVY LPQGHLEQLG DGGGVGLLRY DVPPHVFCRV  120
LDVKLHAEEA TDEVYVQLSL VGESEEVERQ LQEGEVEGDE ETEVDGASKT PTPHMFCKTL  180
TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGTEWRFRH IYRGQPRRHL  240
LTTGWSAFVN KKKLVSGDAV LFLRGDDGEL RLGIRRAGQL KSSIPCSVLN NQNLNAFGAV  300
VNAVSTKSVF PINYNPRSSQ SEFIIPYWKF RKSFGCSVSI GTRFKMRIES EDAAERRYTG  360
LITGIGDVDP IRWPGSKWRC LLVRWDDDTS RQNRVSPWEI EPTASVSPSN GATTSGSKRT  420
RIWHNSISQD FPLPNGSGYS DLAEPARLPK VLQGQEIMGL KTHYCNDILK SQISEVRNHQ  480
LSEIKRCIAD ASSCMLAGSG SGFRIPVGNS DFPYKSFGEY VRFHKVLQGQ EIVSSIPAYQ  540
GAPADARIEN GGLRVFSQAP GAGSRWPASF QEFNSLANSC TTSSAQVSSP SSVLMFQQAS  600
SQLPRPNSVY NVPNHGKGER SNLSGLFDTG KKESLPCPPC YTGYDCIKEH YGVEEVLTSD  660
HSNRNILPSS RKSCRLFGFP LTEVNPVANG VDGAPMASSS LRNFETSFAP LKPQKSAKLD  720
GPSCTNVYKL GSVTGRAIDL SKLGGYDDLM CELEQLFDMK GLLNDPQKGW VVVYTAAADD  780
MMRVGDVPWQ KFRNTASKIL IYTRDMVEAV ACR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-114494092361Auxin response factor 1
4ldy_B1e-114494092361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916027.10.0auxin response factor 3
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2H3XG390.0A0A2H3XG39_PHODC; Auxin response factor
STRINGXP_008783126.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-179ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]