PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010916020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HB-other | ||||||||
Protein Properties | Length: 180aa MW: 19899.7 Da PI: 9.5894 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.3 | 2e-16 | 21 | 71 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +R++ +++q+eeLe+++ +++ p+ae++e LAk +gL+ ++V+ WF NrR XP_010916020.1 21 RRHRKNPHQVEELEKAYSEENSPTAEMKESLAKMTGLNFKRVQAWFGNRRS 71 79999*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-14 | 15 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.588 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-11 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.9E-14 | 21 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.50E-13 | 21 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 22 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEPGEDRKGK MPLEGGDMPA RRHRKNPHQV EELEKAYSEE NSPTAEMKES LAKMTGLNFK 60 RVQAWFGNRR SYNRYGPRSK KHQIDGDGGL LRSPTISGSG DGSSSQSAPP RAPPPTPPLT 120 VPVLPVLQQV LAPPPPESQQ QQLQQAVHSD SSEALPDLPI ITILRIFVFL ICRIFCRIAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-08 | homeobox 1 |