PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010915987.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 171aa MW: 19467.4 Da PI: 6.1094

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010915987.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.3	2.3e-37	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++l rkC+ +C+lapyfpa++p+kfa vhk+FGasnv+k+l+ +++ +reda++ +vyeA r+rdPvyG+++ i+ lq+ +e lk +l+ XP_010915987.1 12 PCAACRTLHRKCSYGCMLAPYFPADEPEKFASVHKVFGASNVIKMLQMVEDGRREDAVKGMVYEAYSRLRDPVYGCTAAISYLQKCVEDLKGQLK 106 7********************************************************************************************99 PP DUF260 96 llkee 100 ++ e+ XP_010915987.1 107 TTSEK 111 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.782	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-38	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDSRVRARPE LPCAACRTLH RKCSYGCMLA PYFPADEPEK FASVHKVFGA SNVIKMLQMV 60 EDGRREDAVK GMVYEAYSRL RDPVYGCTAA ISYLQKCVED LKGQLKTTSE KILESQEQRD 120 QLLSILMDAP YLKQTYLPVG SMVRDSDGSF AFDNMIHDGH YEIFMDNCQM I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-36	12	113	11	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-36	12	113	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915987.1	1e-126	LOB domain-containing protein 11
Swissprot	Q9SK08	4e-39	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2H3ZL78	1e-100	A0A2H3ZL78_PHODC; LOB domain-containing protein 11-like
STRING	XP_008783291.1	1e-101	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17783	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-41	LOB domain-containing protein 11