PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010915216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 285aa MW: 31964.1 Da PI: 10.1817 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.6 | 1.9e-19 | 161 | 194 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + XP_010915216.1 161 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 194 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.8E-21 | 155 | 206 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-13 | 155 | 199 | No hit | No description |
PROSITE profile | PS50114 | 12.466 | 159 | 191 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-15 | 159 | 195 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.55E-15 | 160 | 207 | No hit | No description |
Pfam | PF00320 | 3.7E-17 | 161 | 194 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 161 | 186 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSPFYMNKFS AIPLAEGDQD PSHLTPFTLA SAASSRSRPI LLSTSQERGA NNRDHDLLQQ 60 EPEEHLFISK SSDPPVTFPT NYNNTIEESS HDRHVSQEDL HGPSNWMSSK MRFMRKMMNS 120 DHVGKPRRNM QILEDRVPSN QDRSISNNTN GNSPGGIIRV CSDCNTTKTP LWRSGPRGPK 180 SLCNACGIRQ RKARRAMDTA AASGGIILRE AHSKMRKEKK SDVDRTIPFK KRFKIATTTT 240 TQRNPRFDDV LISLGDSSAV HRVFPQDERD AALLLMALSW GIICS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915216.1 | 0.0 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A2H3X9Q8 | 1e-147 | A0A2H3X9Q8_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
STRING | XP_008793253.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 4e-29 | cytokinin-responsive gata factor 1 |