PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 35916.9 Da PI: 9.0135 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f G C G++C+FaHg XP_010914904.1 92 FKTRLCQKFKT-GSCLWGNNCNFAHG 116 79*********.*************8 PP | |||||||
2 | zf-CCCH | 27.6 | 5.1e-09 | 148 | 171 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++Cr f+ C+yGdrC+F H++ XP_010914904.1 148 KICRKFFNRQVCPYGDRCTFLHVQ 171 79********************86 PP | |||||||
3 | zf-CCCH | 29.4 | 1.4e-09 | 205 | 229 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C + tG+C++G+rC FaHg XP_010914904.1 205 KAKICYKWETTGHCSFGERCIFAHG 229 7789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.97E-9 | 89 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-15 | 91 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-5 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-10 | 142 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-7 | 143 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.206 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-12 | 201 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-7 | 203 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-8 | 203 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 203 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-7 | 205 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDPPPDRALS FFMPPPPFAT ATSGNVIALR PQNLADQPEF EAPLLTRPRN SDDAPLNPLR 60 NRQPVSTMPR PPNPQFNPSR NPPIRGTSCM FFKTRLCQKF KTGSCLWGNN CNFAHGIEEL 120 RQPPPNWQEF VAEERVNGSD RQRMHKNKIC RKFFNRQVCP YGDRCTFLHV QRESSGMAMG 180 PMAGPDSVGG FSSAADCNGS NQKPKAKICY KWETTGHCSF GERCIFAHGL AELKKSGGHV 240 ELDGGKNGAD PPKPLTNSTN NVPPTKAESS CMHEAQQKGV FPKLDEAQQK GVFPKLAKKL 300 SCIYADWIDG APLCSPHLPQ LSKQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914904.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A2H3Y242 | 1e-163 | A0A2H3Y242_PHODC; zinc finger CCCH domain-containing protein 39-like | ||||
STRING | XP_008792071.1 | 1e-163 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22934 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-44 | C3H family protein |