PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914793.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28784.6 Da    PI: 9.6281
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914793.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.3e-171156348
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    i n+  r  t+ kRr+g+lKK +ELS+LC++e++ i++++++++ e
  XP_010914793.1 11 IANDATRRATLKKRRKGLLKKVQELSILCGVEACAIVYGPNDRVPE 56
                    88999************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.787156IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-23160IPR002100Transcription factor, MADS-box
CDDcd002663.02E-19285No hitNo description
PRINTSPR004044.7E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-23393IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161154IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARNKVKLAW IANDATRRAT LKKRRKGLLK KVQELSILCG VEACAIVYGP NDRVPEVWPS  60
PPEAARIVGR FKSMPEMEQT RKMVNQEGFL RQRAVKLLEQ LRKQERENRE MEMKLLIREG  120
LKGRSFDNLG IEDVTCLSWM LERKIKEIYD KMDEIKNKVT VNQVAGGPSA LPLQVMAPPP  180
AAPIGPVVPK EKTTVEQAME ALQRQNWFMD MMSPWPEDFY QPAQPMDPYQ PPPPAPLDHT  240
IPWPDPSFPF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914793.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A2H3Z3H91e-121A0A2H3Z3H9_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008807941.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-40AGAMOUS-like 80