PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010914731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26861.2 Da PI: 8.6394 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50 | 3.7e-16 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r++++ kR++g+lKK +ELS+LCd++++ ii+ +++ XP_010914731.1 11 IADDAARKTSLKKRKKGLLKKVQELSILCDVDACAIIYEPDD 52 789999********************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.881 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-20 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-15 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSRSSMKLEL IADDAARKTS LKKRKKGLLK KVQELSILCD VDACAIIYEP DDRHPELWPS 60 SEEATRMLVR LRSMPEMEQK QKMMNQEEFL YQKMRKLVDQ LHKQEFENKE LEKKLKMYEA 120 LRTGDFSELD MEQAMNLSMM IEQMLKKIYE KMDAIKKHQA AMARVDGVVQ EGGNAAGLNT 180 PRENTPTEKD NEILQRQKQM LDMMIPRSSK TYQPSAGPTN PWPANSLFPF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914731.1 | 1e-171 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2H4A1E8 | 3e-72 | A0A2H4A1E8_PHODC; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_008812533.1 | 4e-95 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50755 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-23 | AGAMOUS-like 80 |