PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914036.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 362aa    MW: 40666.6 Da    PI: 8.5281
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914036.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-1553112155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ k+++lg ++ ++ Aa a++ a++k++g
  XP_010914036.1  53 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgKQVYLGAYDDEKAAAHAYDLAALKYWG 112
                     78*******************999955656446**********99*************98 PP
2AP252.21.5e-16155206155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010914036.1 155 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 206
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1153112IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1653122IPR016177DNA-binding domain
PROSITE profilePS5103219.20354120IPR001471AP2/ERF domain
SMARTSM003804.0E-2354126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-1554121IPR001471AP2/ERF domain
PRINTSPR003674.1E-65566IPR001471AP2/ERF domain
CDDcd000181.46E-23155216No hitNo description
PfamPF008474.6E-12155206IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18155216IPR016177DNA-binding domain
PROSITE profilePS5103218.189156214IPR001471AP2/ERF domain
SMARTSM003804.6E-25156220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17156215IPR001471AP2/ERF domain
PRINTSPR003674.1E-6196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAKNRKNSAT NENTTANTTT TTNNNNNNKN NNGGKMKRTR RSVPRDSPLQ RSSVYRGVTR  60
HRWTGRYEAH LWDKNCWNES QNKKGKQVYL GAYDDEKAAA HAYDLAALKY WGCDTILNFS  120
LSTYEEELKE MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK  180
YLYLGTYATQ EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNHDHDG SNASPSINPL  240
PNSTSTDRNY DVPQSFHQHQ QPSVAEISQF PQQKSSGVAA SSALGLLLQS PKFKEMLERT  300
SAAGGSSSSP KSESKPSGCS FPDDIQTYFE CHDSGSYAEG DDAIFGELHT FTSSMLEFEL  360
DV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914036.10.0AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN41e-112AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2H3XX860.0A0A2H3XX86_PHODC; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_008790117.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-106AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]