PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913727.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 330aa    MW: 35508.5 Da    PI: 6.9634
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913727.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.1e-16250285134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg +   Tp++Rrgpdg++tLCnaCGl ++ kg
  XP_010913727.1 250 CHHCGISAksTPMMRRGPDGPRTLCNACGLVWANKG 285
                     ****977777***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.959114149IPR010399Tify domain
SMARTSM009793.3E-11114149IPR010399Tify domain
PfamPF062001.4E-12118148IPR010399Tify domain
PROSITE profilePS5101713.344175217IPR010402CCT domain
PfamPF062033.1E-16175217IPR010402CCT domain
SMARTSM004012.6E-13244297IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.447244306IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11248295No hitNo description
Gene3DG3DSA:3.30.50.109.0E-16249291IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.34E-16249300No hitNo description
PfamPF003207.7E-14250285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440250277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSENPNPPVD VKPAAGGRFA GHHIHKPVAA HHVLPVVAMP AQIDDGGGGG GESQLIAAAD  60
AQALRQYEEA EHHSGVGVHG MEEDRDVGGD GEGMEADGQV DPSNMGDPHA VIVHQVGGNQ  120
LTLSFQGEVY VFDSVSPEKV QAVLLLLGER EMNAALNSFP SSSHMHNKRT NFPHRVASLM  180
RFREKRKERN FDKRIRYNVR KEVALRMQRN KGQFISSKSK PEDSTSGVTS WDTTQQWGSQ  240
ENRPPAASAC HHCGISAKST PMMRRGPDGP RTLCNACGLV WANKGIMRDL SKNPSPAIPN  300
ALSEPREGNN SAESGAAEPL AMTANGHDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913727.10.0GATA transcription factor 17
SwissprotQ5Z4U51e-101GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3XCJ10.0A0A2H3XCJ1_PHODC; GATA transcription factor 20-like isoform X1
STRINGXP_008781787.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-80ZIM-like 1