PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913582.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31787.9 Da    PI: 4.704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913582.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2067120356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  XP_010913582.1  67 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 120
                     5678*************************************************9 PP
2HD-ZIP_I/II133.48.2e-4366156191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++
  XP_010913582.1  66 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQV 156
                     69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.26E-1962124IPR009057Homeodomain-like
PROSITE profilePS5007118.05862122IPR001356Homeobox domain
SMARTSM003894.7E-2065126IPR001356Homeobox domain
CDDcd000861.29E-1967123No hitNo description
PfamPF000467.6E-1867120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-2268129IPR009057Homeodomain-like
PRINTSPR000311.2E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000311.2E-6102118IPR000047Helix-turn-helix motif
PfamPF021831.7E-17122164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDSGRLIFDS SSSHHGQMLF LGGGNPIFRG ARSVLGMEEG ANKRRPFFTS PDELLEEEYY  60
DEQLPEKKRR LTPEQVHLLE RSFEAENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK  120
TKQLERDFDR LKSSYDSLLA DHDSLLKDND RLRSQVLSLT EKLQAKELEA AGAAGGLKPD  180
DQAASSADHT GVNVHQLKAE DRLSTGSGGS AVVDGDGPPH LVDSSGESYF PESYHCVGPL  240
DGGMQSEEDD GSDEGCNYYS EGMFAEHHHP DEEVAQLSWW VWE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913582.10.0homeobox-leucine zipper protein HOX16
SwissprotQ6YWR46e-99HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2H3XD951e-173A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1
STRINGXP_008781998.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-74homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]