PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913155.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 387aa    MW: 43478.8 Da    PI: 8.2067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913155.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-093454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G C+yG+rC++ H+
  XP_010913155.1 34 VCTFYQK-GVCSYGSRCRYDHV 54
                    5******.*************7 PP
2zf-CCCH21.73.5e-07145166426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C+yG++C+ +Hg
  XP_010913155.1 145 PICS-FAAAGSCPYGEKCPHIHG 166
                     6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3128IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1262956IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-43453IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016142167IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4145166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4147166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.15E-10197274No hitNo description
Gene3DG3DSA:3.30.40.101.3E-10203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00175209269No hitNo description
PfamPF000971.2E-7210267IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.7E-7210267IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.357210268IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
SMARTSM003562.5297325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.39297326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSRRILCKYF AHGACLKGEY CEFSHDWKAQ PNNVCTFYQK GVCSYGSRCR YDHVKVSRHQ  60
ASASSSSSSS LPYVASDSVQ ITHPHMDALN GEFKAASSAP KELTASSKPF VPPGKPVWTQ  120
NFETHTFPEN EGGHVPMSVI LADLPICSFA AAGSCPYGEK CPHIHGDLCS ICGKHCLHPH  180
RLGEREEHIK LCQKNNKRLE ALKLSQEIEC SVCLDRVLSK PTAAERKFGL LSECDHPFCI  240
SCIRNWRSNS PASGMDVNNA VRACPICRKI SYFVIPSVIW YSTKEEKQEI VDNYKAKLKS  300
IDCKYFDFGN GTCPFGTSCF YRDIYNGLGI MFIFTFQKFI QLPDYLHLQS GRCMYTGQES  360
GLKDGPQIGQ VALWLLRCSR HYPCETK
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913155.10.0E3 ubiquitin-protein ligase makorin isoform X3
SwissprotQ5ZA071e-152C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2H3Z4520.0A0A2H3Z452_PHODC; E3 ubiquitin-protein ligase makorin isoform X1
STRINGXP_008808203.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-128C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]