PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 46055.8 Da PI: 8.2678 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 3.9e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ XP_010913154.1 34 VCTFYQK-GVCSYGSRCRYDHV 54 5******.*************7 PP | |||||||
2 | zf-CCCH | 21.6 | 3.7e-07 | 145 | 166 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG++C+ +Hg XP_010913154.1 145 PICS-FAAAGSCPYGEKCPHIHG 166 6788.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.3 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.558 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 145 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 147 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.34E-10 | 197 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.4E-10 | 203 | 269 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00102 | 209 | 269 | No hit | No description |
Pfam | PF00097 | 1.3E-7 | 210 | 267 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.7E-7 | 210 | 267 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.357 | 210 | 268 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 234 | 243 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 2.5 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.39 | 297 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MSRRILCKYF AHGACLKGEY CEFSHDWKAQ PNNVCTFYQK GVCSYGSRCR YDHVKVSRHQ 60 ASASSSSSSS LPYVASDSVQ ITHPHMDALN GEFKAASSAP KELTASSKPF VPPGKPVWTQ 120 NFETHTFPEN EGGHVPMSVI LADLPICSFA AAGSCPYGEK CPHIHGDLCS ICGKHCLHPH 180 RLGEREEHIK LCQKNNKRLE ALKLSQEIEC SVCLDRVLSK PTAAERKFGL LSECDHPFCI 240 SCIRNWRSNS PASGMDVNNA VRACPICRKI SYFVIPSVIW YSTKEEKQEI VDNYKAKLKS 300 IDCKYFDFGN GTCPFGTSCF YRDIYNGLGI MFIFTFQKFI QLPDYLHLQS GRCMYTGQES 360 GLKAHLSVYS FIRNDQVAYK SGTQNLGCLC TPIIKLKEYF DWMKYRDM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913154.1 | 0.0 | E3 ubiquitin-protein ligase makorin isoform X2 | ||||
Swissprot | Q5ZA07 | 1e-152 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2H3Z452 | 0.0 | A0A2H3Z452_PHODC; E3 ubiquitin-protein ligase makorin isoform X1 | ||||
TrEMBL | A0A2H3Z4V3 | 0.0 | A0A2H3Z4V3_PHODC; E3 ubiquitin-protein ligase makorin isoform X2 | ||||
STRING | XP_008808203.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-128 | C3H family protein |
Publications ? help Back to Top | |||
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