PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913124.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 454aa    MW: 49130.1 Da    PI: 8.6416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913124.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11381426655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L  Av YIk+Lq
  XP_010913124.1 381 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAVVYIKDLQ 426
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.183375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15378438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-11379430No hitNo description
Gene3DG3DSA:4.10.280.103.1E-14380439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8381426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MFGSPPATVA KDLNLPYPPA AASFNHRKDE SDLLHRHHQQ QQQQMSSGLL RYRSAPSSLF  60
GEVCEDFLPA RPSSPETETM FARFLAPDTR DEIRDKPVSA AATGGQRSPR FAPPPPPAAA  120
SVAMEHGGAE QLPGQQSAGF SAASQMLYHS QQQLPSHSSV DSSYRVVSSM AMEAEHMKTA  180
AGAAVGGGGG NCSNLIRHSS SPAGLFSHLN VENGFAMMRG MTCFRNGNDS MGDGTNRLKC  240
QISFSSRQDS STGLMSQISE IGSEGMGGSS PEKSNLVAGN GGGRCYIPGF PVATWDDSPL  300
LSDNYSGLKR AREAEGKIVA GLNPSDPQNG EMRNHMSGLN HQFSLPRTSS EMATIEKFLH  360
FQDAVPCRIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN TADMLDFAVV  420
YIKDLQKQVK TLSESRASCT CHASKQKPNV NPSM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913124.10.0transcription factor bHLH130
TrEMBLA0A2H3X0N70.0A0A2H3X0N7_PHODC; transcription factor bHLH130-like
STRINGXP_008776552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-72bHLH family protein