PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 42164.1 Da PI: 9.0254 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.4e-09 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H+p XP_010913061.1 51 PGEPDCAYYIRTGLCRFGMTCKFNHPP 77 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.5 | 9.6e-13 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010913061.1 98 QPECQYYLKTGTCKFGATCKFHHPK 122 799********************96 PP | |||||||
3 | zf-CCCH | 36.4 | 9e-12 | 144 | 168 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_010913061.1 144 EKECAYYLRTGQCKFGNTCKFHHPQ 168 679********************97 PP | |||||||
4 | zf-CCCH | 40.7 | 3.8e-13 | 304 | 329 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_010913061.1 304 DQPECQFYMKTGDCKFGAACRFHHPR 329 689*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0012 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 101 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-7 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.76 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 302 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEYEGNGVHM HGARQPADVT EGSSSLEEEA IWQMNLRGSE LMESGPYPKR PGEPDCAYYI 60 RTGLCRFGMT CKFNHPPNRK MAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH 120 PKDKAGIAGR VQLNILGYPL RPNEKECAYY LRTGQCKFGN TCKFHHPQPS NAMVALRGSS 180 VYSPVHSPTI PGQQSYPGGL TNWSLSRASF IPSPRWQGPS SYAQLILPQG LVQVPGWNPY 240 PGQMGSSSPK SRQQTPGVAE YYSASRQSET SEGAQGTFSS YRLGSIPMGV YALQRENIFP 300 NRPDQPECQF YMKTGDCKFG AACRFHHPRE RLMPVPDCVL SPLGLPLRPI RNTSKILSNV 360 LEIRCFAAIA SIIQSIEALL C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913061.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3ZEL0 | 0.0 | A0A2H3ZEL0_PHODC; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-144 | zinc finger protein 1 |