PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912806.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 347aa MW: 38904 Da PI: 6.3394

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912806.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.8	7.8e-27	256	305	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l dl yF+lpi+dAAkeLg+c+T+LK+iCR++G++RWPhRkiks+ XP_010912806.1 256 GSMQLRDLIDYFHLPIADAAKELGICTTALKKICRKHGMPRWPHRKIKSI 305 67899*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.803	245	327	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-25	258	305	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDRFQPFDSL PNSTEFHSRD DDVLQFLEFS DPDYGQPLAL PAPPNDEATM ELPDMIQDAS 60 FWDFDVQQPV NKQFVLADHG VGNFEAIPPV NHEIPATSTP HPQVPPSTID CSGCQVLREV 120 VHSNGSQNLK LSVHGGPGTF YHAILDVYHN IHGFPPAAEQ SYIDLRTRSF DWVKNFLINY 180 GLLRVHDNYV ILQDTLSVFY DALCANMRYV AASTDTVNVS TSPESGLCQS RPVEVDCSHP 240 VRTLKTGIAA QRERTGSMQL RDLIDYFHLP IADAAKELGI CTTALKKICR KHGMPRWPHR 300 KIKSIDKRIS TLRRGLHPEA DEGATRTQVE IERLKVQKAR ICAALPP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDRFQPFDSL PNSTEFHSRD DDVLQFLEFS DPDYGQPLAL PAPPNDEATM ELPDMIQDAS  60
FWDFDVQQPV NKQFVLADHG VGNFEAIPPV NHEIPATSTP HPQVPPSTID CSGCQVLREV  120
VHSNGSQNLK LSVHGGPGTF YHAILDVYHN IHGFPPAAEQ SYIDLRTRSF DWVKNFLINY  180
GLLRVHDNYV ILQDTLSVFY DALCANMRYV AASTDTVNVS TSPESGLCQS RPVEVDCSHP  240
VRTLKTGIAA QRERTGSMQL RDLIDYFHLP IADAAKELGI CTTALKKICR KHGMPRWPHR  300
KIKSIDKRIS TLRRGLHPEA DEGATRTQVE IERLKVQKAR ICAALPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912806.1	0.0	uncharacterized protein LOC105038636
TrEMBL	A0A2H3Y141	0.0	A0A2H3Y141_PHODC; uncharacterized protein LOC103708559 isoform X1
STRING	XP_008791759.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-14	RWP-RK domain-containing protein