PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19737.4 Da PI: 6.1451 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 7.3e-38 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++l rkC++dC+lapyfp ++p+kf +vhk+FGasnv+k+l+ ++e++reda++s+vyeA+ar++ PvyG+++ i+ lq+ +e l+ +l XP_010912388.1 13 PCAACRLLHRKCSPDCMLAPYFPTDHPEKFGVVHKVFGASNVIKMLQMVEESRREDAVKSMVYEAQARLKSPVYGSTSAIFYLQKCVEDLEDHLR 107 7*******************************************************************************************999 PP DUF260 96 llkee 100 +++++ XP_010912388.1 108 ETRAQ 112 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.604 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-38 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDSQARAIAK PDPCAACRLL HRKCSPDCML APYFPTDHPE KFGVVHKVFG ASNVIKMLQM 60 VEESRREDAV KSMVYEAQAR LKSPVYGSTS AIFYLQKCVE DLEDHLRETR AQLLDAREQR 120 DQLLSVLTDT YHGSQFYHTN DPVFDDASAM RTDTNMIHVQ SAGENPMNYY QMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 13 | 114 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 13 | 114 | 11 | 112 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912388.1 | 1e-129 | LOB domain-containing protein 25 | ||||
Swissprot | Q9SK08 | 2e-39 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2H3X1V2 | 5e-91 | A0A2H3X1V2_PHODC; LOB domain-containing protein 1-like | ||||
STRING | XP_008777046.1 | 8e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17783 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-42 | LOB domain-containing protein 11 |