PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Dof | ||||||||
Protein Properties | Length: 300aa MW: 32843.6 Da PI: 4.8142 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.3e-38 | 30 | 85 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ XP_010911943.1 30 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 85 58***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-32 | 16 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-32 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MLSSWDNILP CPTRPVMVDR RWKPNVEIAP NCPRCDSPNT KFCYYNNYSL SQPRYFCKGC 60 RRYWTKGGSL RNVPVGGGCR KNRRGKSVRL STVVPPDLSY GRRLSGQIRP DLALDGMVGN 120 STGSVQSMDA STTTDGSTID LALLYAKFLN QHPVVEPGLG VTELPGGIDE SFDSSGRQSD 180 TNLNQQTPAP LPNQYNLVEC QRVSEPIAEA LLGDGDQQSI GNHDLPVDPS AYESPAFPTE 240 GISSFLSSNC PGVPNLASEA ANYQGFGSLQ LEDSMALHQN LIVNDWSTMD YSSLEAFYWS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911943.1 | 0.0 | uncharacterized protein LOC105037989 | ||||
TrEMBL | A0A2H3X8G8 | 0.0 | A0A2H3X8G8_PHODC; dof zinc finger protein DOF3.5-like | ||||
STRING | XP_008779883.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-39 | Dof family protein |