PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911569.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 309aa    MW: 35398.6 Da    PI: 9.2882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911569.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173277147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010911569.1 32 RGHWRPSEDEKLRQLVEEYGPQNWNLIAEKLR-GRSGKSCRLRWFNQ 77
                     899*****************************.***********996 PP
2Myb_DNA-binding57.43.3e-1884127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010911569.1  84 RRPFTEEEEERLLAAHRVHGNK-WAFIARLFP-GRTDNAVKNHWHV 127
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0762778IPR017930Myb domain
SuperFamilySSF466891.76E-2931125IPR009057Homeodomain-like
SMARTSM007171.5E-153180IPR001005SANT/Myb domain
PfamPF002493.7E-173277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-273385IPR009057Homeodomain-like
CDDcd001672.14E-143576No hitNo description
PROSITE profilePS5129427.33579133IPR017930Myb domain
SMARTSM007172.2E-1583131IPR001005SANT/Myb domain
PfamPF002494.1E-1584126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2186131IPR009057Homeodomain-like
CDDcd001677.88E-786126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQARQLKQRG DLLIMELAAA TGGAEDTKGC SRGHWRPSED EKLRQLVEEY GPQNWNLIAE  60
KLRGRSGKSC RLRWFNQLDP RINRRPFTEE EEERLLAAHR VHGNKWAFIA RLFPGRTDNA  120
VKNHWHVIMA RRQRERSRIF SKRYCRNPLL DACSNTNTAH QGESDSRPPT KDRIFKLSPL  180
SSSPSMAFSG STKSSSLRDN SGAKRMDYYN RFNVLESFHS TNRCLFSYHC TNQNFSAPGQ  240
ANKKPFVGFT SVNDGCVGKD SDESEIIRVG DNMIQFVNIR ADDEQEQEDE PMRHKDVPFI  300
DFLGVGIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-33321327107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911569.10.0transcription factor MYB54-like
TrEMBLA0A2H3ZAM01e-173A0A2H3ZAM0_PHODC; transcription factor MYB54-like
STRINGXP_008810902.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-65myb domain protein 52