PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21629.5 Da PI: 5.0001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.5 | 5.3e-36 | 4 | 121 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF P+deelvv++L +k++ +++ ++i+++++ +v+PwdL+ k+ ++ ++wyfFs+r + nr+ +g W g d++++s XP_010911499.1 4 LPPGFRFFPSDEELVVHFLYPKASLLPCHP-DIIPSLNLRHVDPWDLDGKALQGGNQWYFFSQRIQ--------NRVSPNGHWMPIGIDEPITS- 88 79*************************999.99**************977778899******9855........89999***************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy g+ap g+kt+Wvm ey+l XP_010911499.1 89 SNKVVGMKKTLVFYIGEAPCGVKTNWVMLEYHL 121 8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-48 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.597 | 4 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-21 | 5 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGGLPPGFRF FPSDEELVVH FLYPKASLLP CHPDIIPSLN LRHVDPWDLD GKALQGGNQW 60 YFFSQRIQNR VSPNGHWMPI GIDEPITSSN KVVGMKKTLV FYIGEAPCGV KTNWVMLEYH 120 LLDSSTNSSS SGNRSSKKRG HQRIVSDNWI ICRVYEASCD SVPSFLNDET ELSCLDEVFL 180 SLDDLDEISL PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-39 | 4 | 161 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 4 | 161 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 4 | 161 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 4 | 161 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-39 | 4 | 161 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 4 | 161 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 4 | 161 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911499.1 | 1e-141 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 2e-68 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1D1YHZ2 | 1e-85 | A0A1D1YHZ2_9ARAE; NAC domain-containing protein 55 (Fragment) | ||||
STRING | MLOC_15681.2 | 2e-82 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-69 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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