PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 28871.7 Da PI: 7.5525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 63 | 111 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a+++ +++++g XP_010911281.1 63 YRGIRQRP-WGKWAAEIRDPM----KgVRVWLGTFNTAEEAARAYDREARRIRG 111 9*******.**********84....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-22 | 62 | 120 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.512 | 62 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 62 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-39 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-12 | 63 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 63 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.84E-30 | 63 | 118 | No hit | No description |
PRINTS | PR00367 | 6.2E-12 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MCGGAIISDF IPRRETSSSN HHLCASNLWP DAASSFFPKT PEPVSQPPPP EKGKRKRERK 60 NLYRGIRQRP WGKWAAEIRD PMKGVRVWLG TFNTAEEAAR AYDREARRIR GKKAKVNFPN 120 EDPPPEPPKP PSQPYHPHYY PRGPIPSFPP SVPHGRPFAA PKMETVESFP APAVANGGDG 180 GAAAGEVKRL SEELMAYETY MNFFEIPYME GGAVAQPAAP EEDVAVAVAV SEAASIPCNQ 240 QAAVPTSVGM LWDFDDVPAT SIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 63 | 119 | 6 | 63 | ATERF1 |
3gcc_A | 1e-21 | 63 | 119 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911281.1 | 0.0 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A2H3XX94 | 1e-122 | A0A2H3XX94_PHODC; ethylene-responsive transcription factor ERF071-like | ||||
STRING | XP_008789913.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-25 | ERF family protein |