PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010910753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 226aa MW: 25415.9 Da PI: 8.9377 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 9e-21 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ XP_010910753.1 6 STRWCPTPEQLMILEEMYRSgVRTPTASQIQQITAHLsyygRIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 121.9 | 2.7e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk XP_010910753.1 5 PSTRWCPTPEQLMILEEMYRSGVRTPTASQIQQITAHLSYYGRIEGKNVFYWFQNHKARDRQK 67 589***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.446 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-6 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.12E-5 | 5 | 67 | No hit | No description |
Pfam | PF00046 | 2.3E-18 | 6 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-8 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MPQAPSTRWC PTPEQLMILE EMYRSGVRTP TASQIQQITA HLSYYGRIEG KNVFYWFQNH 60 KARDRQKLRR RLSRHHHLLF SCTHPHSLHR FQETFHPPPL PPPPPPPPLP FHHQTLPHFL 120 HHVPVNSSSS STLCHCFSGG GSQVANQGLN LLCKLETGGR EETPTTAHNM EYGYEWMAKM 180 DGGSAVPLCC RPLKTLDLFP TKSTGLKDEG STSKSSSCST STNLSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910753.1 | 1e-167 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A2H3Y9C3 | 1e-113 | A0A2H3Y9C3_PHODC; WUSCHEL-related homeobox 3B-like | ||||
STRING | XP_008795405.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-38 | WOX family protein |