PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909716.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 739aa    MW: 79430 Da    PI: 6.4612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909716.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88.1e-08306326526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ GtC++Gd C +aHg
  XP_010909716.1 306 PCPDFRK-GTCRRGDMCEYAHG 326
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.6E-1434162IPR020683Ankyrin repeat-containing domain
PfamPF127962.9E-976151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003480110IPR002110Ankyrin repeat
PROSITE profilePS5029716.62680157IPR020683Ankyrin repeat-containing domain
CDDcd002046.72E-1380160No hitNo description
Gene3DG3DSA:1.25.40.201.8E-1581174IPR020683Ankyrin repeat-containing domain
SMARTSM002480.005117149IPR002110Ankyrin repeat
PROSITE profilePS5008811.968117152IPR002110Ankyrin repeat
SMARTSM003563.1E-6301327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4305328IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911306328IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.69336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MCGGPERIKP SSEETRSFSP AKPMSHLTVV TDDCFSSLLE LAANNDADGF RRSLDRDPSA  60
VDEVGMWYGR KKGSNQMVLE RRTPLMVAAT YGSLDVLRLI LSLSVVDVNR DCGPGPDSTT  120
ALHCAASGGS ANAVDAVKIL LAAGADPNAV DANGHRPADV IVVPPKLRDV KLALEELLGG  180
SSGVSGGEQQ RQQRDLHVMS ARMTSSSNSN SPPLSSSPDE DGSPSSDLIA ELPLPTITEK  240
KEYPVDPSLP DIKNSIYTTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY  300
HYSCVPCPDF RKGTCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCTR RVCFFAHTNE  360
ELRPLYMSTG SAVPSPWSSA SAAMEMVAVM GLMPGSPSSV SAMMSPFTPP MSPSGNSMSH  420
STLGWPQPSV PTLHLPGSNL QSSRLRSSLS ARDMPLDDLS MVPDFDAQQL LNDLCYSRFG  480
SAAGSRSARS KTLTPSNLDE LFSAEISSPR YSSDQGSIFS PSHRTAVLNQ FQQQHQSLLS  540
PINTNVFSPK AVDHQQLPGQ SSLFQASLGI SSPGRMSPRA IEPLSPMSSR LAAFAQREKQ  600
QQTLRSLSSR DLGSGTSPIA GSPMNSSWSK WASPSGALDW GVNGDELGRL KRSSSFELRS  660
GGEEPDLSWV HSLVKESPPE KLATAAMTSV GPSVSVPAGA ADGGGGGEAS KSNAQIDGHD  720
QAAVLSAWLE QMQLDQMVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909716.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3X5180.0A0A2H3X518_PHODC; zinc finger CCCH domain-containing protein 24-like
STRINGXP_008778438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]