PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22864.1 Da PI: 4.7723 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 4.2e-42 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C lapyfp ++p kf +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_010909448.1 42 PCAACKILRRRCIDKCLLAPYFPPNEPLKFSTAHRVFGASNIIKLLQELPESQRADAVSSMVYEANARMRDPVYGCAGAICQLQKQVSELQAELA 136 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010909448.1 137 RAQAE 141 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.323 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-42 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEASVHATTT TFHYPSSSSP SSSTTSSPPP PRPSPPPVVL SPCAACKILR RRCIDKCLLA 60 PYFPPNEPLK FSTAHRVFGA SNIIKLLQEL PESQRADAVS SMVYEANARM RDPVYGCAGA 120 ICQLQKQVSE LQAELARAQA ELVTMQTQYA SLVATICMEM PQSQQFMLQS LDNFLDTNNL 180 NLLQSDGSMQ LDDYCQDSIW EAELLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 37 | 143 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 37 | 143 | 6 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909448.1 | 1e-152 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 7e-65 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2H3YXP4 | 1e-103 | A0A2H3YXP4_PHODC; LOB domain-containing protein 11-like | ||||
STRING | XP_008805041.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-54 | LOB domain-containing protein 11 |