PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909305.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 684aa MW: 73524.5 Da PI: 7.2351

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909305.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.6	3.2e-14	170	231	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ kr r+++NRe+A+ sR+RKk ++eeLeekvk++ + ++L +++ + e a+l+++ XP_010909305.1 170 EEDEKRKARLMRNRESAQLSRLRKKHYVEELEEKVKSMHSTIHELNTKISYIMAENASLRQQ 231 6788*******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.0E-17	170	234	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-12	171	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	172	232	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.82E-12	174	232	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-16	174	232	No hit	No description
CDD	cd14704	2.28E-19	175	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MADPSLLDPN PSSIHASNGP LFDPDLSLDD LPLPADLEAD FLFDDFDISI DFPIEDLLQS 60 PEDQPFPPSS DGSPGPNAND GSGFSSSYPH QSSDLSRNSG PSSPDSGNSS GVTSQEAKLE 120 EEKSGWNLKR KTDREDGCAH TNSNPNPRSS KYRRSEEGNS AGVFNAGSEE EDEKRKARLM 180 RNRESAQLSR LRKKHYVEEL EEKVKSMHST IHELNTKISY IMAENASLRQ QLGGSGGNCA 240 PPGVYPPPQI VPMHFPWIPG YSLRPQGSQV PLVPIPKLKP QQPTSAPRAK KSESKKNESK 300 TKKVASVSLL GLLLAMLFFR SVVPGVNLGF VGRRDEVSGG LAAVKGGIFG QSKGRILSVS 360 GHGRGLNSTD EIGLHDGKMS FGEGGIGRCA GRRCETGADG SVFKVKLNLS ETLPALLYVP 420 RNGKHVKING NLIIHSVLAS EKAMAQTKSI DQAKQSSAKE GKETGPAIPN NVASVLALPK 480 SGREVDRHSN SYRSSAEHQR ALASDSEDLF GDNSKSIPVD GPLQQWFREG IAGPILSSGM 540 CTEVFQFDVS PASAPGGIIP ATKIVNTSVA NATEKLPPSA YPRKMKNRRV MYPEPIPLPG 600 TTLNDTERFA EPSESSNLHD NKYVTSMVVS VLADPREAGD GDGDAKISPK SLSRIFVVVL 660 LDSVKYVTYS CVLPFKSSGP HLVN

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MADPSLLDPN PSSIHASNGP LFDPDLSLDD LPLPADLEAD FLFDDFDISI DFPIEDLLQS  60
PEDQPFPPSS DGSPGPNAND GSGFSSSYPH QSSDLSRNSG PSSPDSGNSS GVTSQEAKLE  120
EEKSGWNLKR KTDREDGCAH TNSNPNPRSS KYRRSEEGNS AGVFNAGSEE EDEKRKARLM  180
RNRESAQLSR LRKKHYVEEL EEKVKSMHST IHELNTKISY IMAENASLRQ QLGGSGGNCA  240
PPGVYPPPQI VPMHFPWIPG YSLRPQGSQV PLVPIPKLKP QQPTSAPRAK KSESKKNESK  300
TKKVASVSLL GLLLAMLFFR SVVPGVNLGF VGRRDEVSGG LAAVKGGIFG QSKGRILSVS  360
GHGRGLNSTD EIGLHDGKMS FGEGGIGRCA GRRCETGADG SVFKVKLNLS ETLPALLYVP  420
RNGKHVKING NLIIHSVLAS EKAMAQTKSI DQAKQSSAKE GKETGPAIPN NVASVLALPK  480
SGREVDRHSN SYRSSAEHQR ALASDSEDLF GDNSKSIPVD GPLQQWFREG IAGPILSSGM  540
CTEVFQFDVS PASAPGGIIP ATKIVNTSVA NATEKLPPSA YPRKMKNRRV MYPEPIPLPG  600
TTLNDTERFA EPSESSNLHD NKYVTSMVVS VLADPREAGD GDGDAKISPK SLSRIFVVVL  660
LDSVKYVTYS CVLPFKSSGP HLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909305.1	0.0	bZIP transcription factor 39
Swissprot	Q6AU90	1e-160	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A2H3Z5Y8	0.0	A0A2H3Z5Y8_PHODC; bZIP transcription factor 39-like
STRING	XP_008808577.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]