PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909262.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WOX

Protein Properties

Length: 197aa MW: 22382.4 Da PI: 6.7819

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909262.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a+e++ XP_010909262.1 6 STRWCPTPEQLMILEEMYRSgVRTPNAAQIQQITAHLsyygKIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	123.9	6e-40	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk XP_010909262.1 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAQIQQITAHLSYYGKIEGKNVFYWFQNHKARERQK 67 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.365	2	67	IPR001356	Homeobox domain
SMART	SM00389	1.9E-6	4	71	IPR001356	Homeobox domain
CDD	cd00086	2.30E-5	5	67	No hit	No description
Pfam	PF00046	5.3E-19	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-12	7	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-8	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAQIQQITA HLSYYGKIEG KNVFYWFQNH 60 KARERQKLRR RLGRHQQLLH YQLHQSEDAP PPPPSPILQH HMPPHFLHQG CFQGATSQGL 120 DLVGKLETVG MEEEEEEEPM TSAMGFEQEW MATMDVSSAV PPCCRPLKTL DLFPVKSTGL 180 KDECSSSKSS SCSTSTN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019702890.1	1e-117	WUSCHEL-related homeobox 3
TrEMBL	A0A2H3WZS3	1e-109	A0A2H3WZS3_PHODC; WUSCHEL-related homeobox 3B-like
STRING	XP_008776170.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-36	WOX family protein