PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WOX | ||||||||
Protein Properties | Length: 244aa MW: 26681.9 Da PI: 10.2242 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.4e-20 | 95 | 154 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++ +eq+++Le+l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ XP_010909238.1 95 TRWNPAPEQIRALEALYRGgMRTPNAQQIEHITAELgkygRIEGKNVFYWFQNHKARERQ 154 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.5 | 5.1e-37 | 95 | 156 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+P peQi+ Le+ly+ G+rtPn+++i++itaeL +yG+ie+kNVfyWFQN+kaRerqkq XP_010909238.1 95 TRWNPAPEQIRALEALYRGGMRTPNAQQIEHITAELGKYGRIEGKNVFYWFQNHKARERQKQ 156 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-13 | 90 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.252 | 90 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-7 | 92 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.59E-5 | 95 | 156 | No hit | No description |
Pfam | PF00046 | 7.1E-18 | 95 | 154 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 96 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKVQQLAMGG FWEHQLQEPS SPSSSSSSST TSSLTIHFKR LRPLAPKLTA TVTATTVAAS 60 QTIASLDVKG FNFPKAKCTA RNPDSSQVET QSGGTRWNPA PEQIRALEAL YRGGMRTPNA 120 QQIEHITAEL GKYGRIEGKN VFYWFQNHKA RERQKQKRSA LLALSSSNND SSSNSSTCPP 180 IMALKSTGSR GGRVGGGEVE EYYDGSCKRK CRSWGGVGRD IMEEGGGDRT LELFPLHPEG 240 KQMR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 196 | GGRVGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909238.1 | 0.0 | WUSCHEL-related homeobox 4 isoform X2 | ||||
Swissprot | Q6X7J9 | 7e-56 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A2H3X5K9 | 1e-74 | A0A2H3X5K9_PHODC; WUSCHEL-related homeobox 4 | ||||
TrEMBL | M0TQR5 | 6e-74 | M0TQR5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P15620_001 | 1e-74 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 8e-49 | WUSCHEL related homeobox 4 |