PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 25123.2 Da PI: 8.374 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.1 | 2.5e-35 | 32 | 86 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC+s++tkfCyynny++sqPr+fC++CrryWt GG+lrnvP+Gg++rk+ XP_010908824.1 32 RERCPRCNSRDTKFCYYNNYNTSQPRHFCRSCRRYWTLGGSLRNVPIGGSSRKRL 86 568*************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.866 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-30 | 33 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-18 | 40 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQTKRMPSET GEGRRRPAEG PAEEEAAAER GRERCPRCNS RDTKFCYYNN YNTSQPRHFC 60 RSCRRYWTLG GSLRNVPIGG SSRKRLRPSP ASAAATATVH SLRPLPSLSS QAPSLDLPST 120 TSPPSAFGSL LPGPVSAGFL ALGEPFLDRR TGFELGLGLG LRSGPAASPS IEELGFGLGT 180 TLLWPTALLD EEGVIGGGDT WRVGGGGTDC FGAPGPAAVW PDLAIAAAPA EGSGGAGGEL 240 R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908824.1 | 1e-170 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A3Q0I6M5 | 1e-122 | A0A3Q0I6M5_PHODC; dof zinc finger protein MNB1A-like | ||||
STRING | XP_008813223.1 | 6e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 4e-22 | DOF zinc finger protein 2 |