PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010908610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24712.7 Da PI: 10.2378 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.7 | 2.7e-22 | 16 | 62 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krie++ rqv fskRr+g++KKA ELS+LC+ae+ vi+fs+ gk + XP_010908610.1 16 KRIESEEARQVCFSKRRAGLFKKAIELSILCGAEIGVIVFSPAGKPF 62 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.71E-29 | 8 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.969 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-35 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.75E-40 | 9 | 80 | No hit | No description |
PRINTS | PR00404 | 7.0E-21 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-21 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-21 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MVRRKPSMGR QKIEIKRIES EEARQVCFSK RRAGLFKKAI ELSILCGAEI GVIVFSPAGK 60 PFSFGHPSVD SIIDRFISGS PSPTTIPSAN PRMPAAREMM VVRELNRQYT DLAALLETER 120 RKKVVLEEAV RVMRAGKAVS WEANIEELGL GELEGLQKSF ERLRMDMAMR ADQLVIEAAH 180 AQSSSMAAAS SAAPPPSGVS LGFGRELEGS MALPPPTFFG HGRGLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 8 | 80 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908610.1 | 1e-162 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2H3XTF6 | 1e-117 | A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_008788342.1 | 1e-117 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-34 | AGAMOUS-like 61 |