PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908511.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 383aa MW: 44313.3 Da PI: 5.3761

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908511.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	91	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ XP_010908511.1 91 KSILCEFFKA-GQCQKGFKCKFSHD 114 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.272	89	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	89	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.7E-5	89	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	91	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7	161	198	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.216	161	199	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	2.8E-17	218	301	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MPPKRQPSKA ELAKKQKVIE DKTFGLKNKN KSKNVQKYVQ SLQQTVQPKP DPSKITAKKK 60 KEEDKAREKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK 120 GEKIDLYSDK RDQPNETMED WDQETLEKVV ESKKKEYNQN KPTEIVCKYF LEAVERKQYG 180 WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KTSTSTPLTP 240 ELFMQWKKKK MEEREAGLAV QRAERAKSDR MSGRELFLLD SSVFVDDAEA FDKYQREEES 300 DASEEVIIRL MVYHLLILLD VMKYEKVKNE NGAERPGTST SADKDVLDDD DVEELDIDEL 360 NELEASLSKT FIQIREPDIE ASS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MPPKRQPSKA ELAKKQKVIE DKTFGLKNKN KSKNVQKYVQ SLQQTVQPKP DPSKITAKKK  60
KEEDKAREKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK  120
GEKIDLYSDK RDQPNETMED WDQETLEKVV ESKKKEYNQN KPTEIVCKYF LEAVERKQYG  180
WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KTSTSTPLTP  240
ELFMQWKKKK MEEREAGLAV QRAERAKSDR MSGRELFLLD SSVFVDDAEA FDKYQREEES  300
DASEEVIIRL MVYHLLILLD VMKYEKVKNE NGAERPGTST SADKDVLDDD DVEELDIDEL  360
NELEASLSKT FIQIREPDIE ASS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908511.1	0.0	zinc finger CCCH domain-containing protein 11 isoform X1
Swissprot	Q0JHZ2	0.0	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A2H3WZJ7	0.0	A0A2H3WZJ7_PHODC; zinc finger CCCH domain-containing protein 11-like
STRING	XP_008776070.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8859	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-155	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]