PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 25465.8 Da PI: 8.5961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.5 | 2.7e-44 | 26 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ XP_010908480.1 26 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHQLRQLQMDLS 120 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_010908480.1 121 CAKSE 125 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.899 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-44 | 26 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MASSSAPVPA SSAAVSSSMT ASTSSPCAAC KFLRRKCQPD CVFAPYFPPD QPQKFVHVHR 60 VFGASNVTKL LNELHPYQRE DAVNSLAYEA DMRLRDPVYG CVGVISILQH QLRQLQMDLS 120 CAKSELSKYQ SAAGSSAPTF GGGLATAGVH GFLNADHPIG FGREQFFPAG NNREPPRPNQ 180 HLMMRNFEGE LVGRLGANGA YDAAGIVAAM NASAASIGPL GGQFLKPSSA GRNDRPSVGP 240 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-54 | 16 | 139 | 1 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-54 | 16 | 139 | 1 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029118870.1 | 1e-152 | protein ASYMMETRIC LEAVES 2 | ||||
Swissprot | Q32SG3 | 2e-80 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A2H3ZNL3 | 1e-130 | A0A2H3ZNL3_PHODC; LOB domain-containing protein 6-like | ||||
STRING | XP_008788266.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-58 | LBD family protein |