PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908429.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SRS

Protein Properties

Length: 324aa MW: 34244.8 Da PI: 7.862

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908429.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.6	1.7e-68	92	250	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdCah RCRtCCksrgf+C thvkstWvpaakrrerqqqlaaa++ + +++ +e + +++k ++++ t XP_010908429.1 92 GGGISCQDCGNQAKKDCAHLRCRTCCKSRGFHCPTHVKSTWVPAAKRRERQQQLAAAAALQHHHHhqyrgggSEGSGGGGETSKRPRETTRLPTA 186 5789***********************************************999888777766567777522222222333445566677778 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ ++s le++s+P+evss+avfrcvrvs vd++e+e+aYqtavsigG vfkGiLydqG+e+ XP_010908429.1 187 ITATTSGGVLEAASFPPEVSSQAVFRCVRVSPVDEAEDEYAYQTAVSIGGRVFKGILYDQGPEA 250 8888899999**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.6E-67	94	249	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-27	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-24	201	248	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFGFSLGGSQ NHQQRQQQGD QEGIPPENLF LYGGAGGRSE EIPYARGFGL WQQQHQIQRQ 60 HQIHSSSSAG ETLLSFSDGP GRSAGAMRSG AGGGISCQDC GNQAKKDCAH LRCRTCCKSR 120 GFHCPTHVKS TWVPAAKRRE RQQQLAAAAA LQHHHHHQYR GGGSEGSGGG GETSKRPRET 180 TRLPTAITAT TSGGVLEAAS FPPEVSSQAV FRCVRVSPVD EAEDEYAYQT AVSIGGRVFK 240 GILYDQGPEA EYMSSTHYHT HHGDASPSPP APAAISTAAA IAGSAVAAAN TIASDAAAAL 300 LDPYPTPLSA FMAGTQFFPQ HPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908429.1	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	3e-64	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2H3YY75	1e-153	A0A2H3YY75_PHODC; protein SHORT INTERNODES-like
STRING	XP_008805615.1	1e-115	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-50	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]