PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908183.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 273aa    MW: 30907.4 Da    PI: 9.224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908183.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05127146120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C+ C+ksF+r  n++ H+
  XP_010908183.1 127 FYCTVCNKSFNRYNNMQMHM 146
                     79*****************9 PP
2zf-C2H214.50.0001211233123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k+F  + + ++H +++
  XP_010908183.1 211 FKCRKCSKPFAVRGDWRTHEKNC 233
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-5113150No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5127146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.25127149IPR015880Zinc finger, C2H2-like
PfamPF128742.4E-5127146No hitNo description
PROSITE profilePS5015710.679127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4197231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-5197231No hitNo description
SMARTSM0035567211231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58231267IPR007087Zinc finger, C2H2
SMARTSM00355270237262IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDEGSNLCFQ SPPFFEWLKP PSSSSSSSPP LAQECLPLLG SLGGAKKPIE EQEDFVGKDV  60
SQEKVTVALN IGLPGASREV DGGTKPLNRK KEEEEEMESV RDCDSGGSSK RFWIPTPAQI  120
LIGPVQFYCT VCNKSFNRYN NMQMHMWGHG SEYRKGTESL KGTQRIAMLK LPCYCCAHEC  180
KNNINHPQAK PLKDFRTLQT HYKRKHGLKP FKCRKCSKPF AVRGDWRTHE KNCGKVWFCT  240
CGSNFKHKRS LKDHMRSSGN GHSHYLPQKI PEL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908183.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-99ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A3Q0IC821e-169A0A3Q0IC82_PHODC; zinc finger protein WIP3-like
STRINGXP_008804851.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.19e-97WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]