PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907664.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 245aa    MW: 27608.3 Da    PI: 9.3406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907664.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.17.4e-49141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+d+ k++Pw+Lp    ++e+e yfF  r+ ky++g+r nrat  gyWkatgkdk+vl+ 
  XP_010907664.1  14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPEIDLGKYNPWELP---GGSEQERYFFYLREAKYPNGNRLNRATGCGYWKATGKDKKVLAL 104
                     79****************************.89***************...4578899**********************************987 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk+Lvfy+g+ p+g++tdW+mheyrl
  XP_010907664.1 105 rSNQVVGMKKVLVFYHGNPPRGSRTDWIMHEYRL 138
                     57788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-587173IPR003441NAC domain
PROSITE profilePS5100555.82214173IPR003441NAC domain
PfamPF023655.8E-2615138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDRPSFMRHG VVKLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPEID LGKYNPWELP  60
GGSEQERYFF YLREAKYPNG NRLNRATGCG YWKATGKDKK VLALRSNQVV GMKKVLVFYH  120
GNPPRGSRTD WIMHEYRLAG AETRTGAFPQ RKNSTHFSMV PTKDWVLCRI FKKKRATKMG  180
VDVEEYCEDS QTRNGGIGFI DFMGLRDGSP RSSSPSSSES SCVTEFSDGS SNGDEATCSD  240
SLSPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-491217815170NO APICAL MERISTEM PROTEIN
1ut4_B1e-491217815170NO APICAL MERISTEM PROTEIN
1ut7_A1e-491217815170NO APICAL MERISTEM PROTEIN
1ut7_B1e-491217815170NO APICAL MERISTEM PROTEIN
3swm_A2e-491217818173NAC domain-containing protein 19
3swm_B2e-491217818173NAC domain-containing protein 19
3swm_C2e-491217818173NAC domain-containing protein 19
3swm_D2e-491217818173NAC domain-containing protein 19
3swp_A2e-491217818173NAC domain-containing protein 19
3swp_B2e-491217818173NAC domain-containing protein 19
3swp_C2e-491217818173NAC domain-containing protein 19
3swp_D2e-491217818173NAC domain-containing protein 19
4dul_A1e-491217815170NAC domain-containing protein 19
4dul_B1e-491217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907664.10.0NAC domain-containing protein 83
SwissprotQ9FY932e-78NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2H3X4021e-158A0A2H3X402_PHODC; NAC domain-containing protein 83-like
STRINGXP_008777977.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-80NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]