PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906741.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 1056aa MW: 117963 Da PI: 7.8936

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906741.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.7e-09	215	235	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa+ G C++G++CkF H XP_010906741.1 215 PPCRDFAA-GRCRRGSQCKFLH 235 79****.*********** PP
2	zf-CCCH	17.6	7.1e-06	307	330	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 te+C +f + G C++G++C++ H XP_010906741.1 307 STERCYDFTK-GRCHRGSSCRYVHH 330 59******.***********7 PP
3	zf-CCCH	25.4	2.5e-08	371	390	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++fa+ G C++G+ CkF+H XP_010906741.1 371 PCKYFAE-GRCRRGEDCKFSH 390 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.403	211	238	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.8E-6	211	237	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-6	215	235	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.7E-5	216	237	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-4	304	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.027	305	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.934	305	332	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.591	366	393	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-5	366	392	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	369	391	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-5	371	391	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-6	371	390	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA 60 ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH 120 WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR 180 SRSRSRSRSR SPYGLNRGPE RWADRGRIGA GKLAPPCRDF AAGRCRRGSQ CKFLHEDGGR 240 RHSGRNYETD LRENRYEKQR YSGQDKENYA DSWEQSDYAR NKLSPRHGSQ YDEGDCVKLE 300 LHKSNKSTER CYDFTKGRCH RGSSCRYVHH EVSSHGGWST RDEAREKTYD RRDLNASLGG 360 RIESRRVSDT PCKYFAEGRC RRGEDCKFSH QDVPHEHLEG RPGDNSMIYN LGIGDGSSRI 420 SSNWSDQTTA INVTNSSQWI SNDGAGIAVP QSVDRVDSGQ KPQYSQSQNP EGGNCQIVAQ 480 EASQKASTSQ EEKITEENSG QHQIPTVSAQ QTADRAYSIK DEMFSCEKNG TTVASNARPQ 540 AEMNSASNLS TVVSIAGQSF SQDGQSQYMG PQPFHAQSFT PNAQFQQIVP PLPFSGQLQQ 600 LYPMTSNGQS QFRVHSALLN TQNFNLSMHN QPVHLGQNKQ NYNPGGQTQQ NLNLPPPQTG 660 QSQQNFQVLQ SLPPPQSGPS QQNFNLSGQI QYTVPPFSGQ NQQNNSLNGQ NHQSLPPPQN 720 GPSNQNVHLL APDGQSQYAT PQPANALSFN SEEKSLQTSS ENTGREGINQ NTDESEKKSL 780 PLCSDTPVAH KVVTSEQAAR ITDLSASLAQ FFHNSGLPPS QLFPPSSVRP PANPAAPFLQ 840 PSEGSWTQSH VPTSDIMQPI KSETGNLPSG FSSNSTEQKD PKMVETQTHL ESMIPVSVTD 900 GTDGNPSKGV NLKEKQQHGN HNPMQVELSV DTASKKVNEI ETGQIKKEQA AHLEDLDADM 960 RTDGESKRSK EIKGIRLFKC SLVEYVKDIL KPTWKEGHLS KEAHKTIVKK VVDKVTGAMQ 1020 GPNIPQTQEK IDLYLLHSKT KLNRLVQAYV EKYVKS

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MAENVRKRIS KWDVVPEPHA PFISRQDSSL PLIADDPRKE KARSDWNSSN VDGEQFSRLA  60
ETKAEDFVHK DNSEAEKKFT RWSEQANDKT KLSEDFSERP PFPKQYDLEL HHKDGSSKSH  120
WEPQHENQTT VKVANMNKET DGWDLTQDHG YSSSMSPGLD SWRQRSCSGS PRAGWWRSRR  180
SRSRSRSRSR SPYGLNRGPE RWADRGRIGA GKLAPPCRDF AAGRCRRGSQ CKFLHEDGGR  240
RHSGRNYETD LRENRYEKQR YSGQDKENYA DSWEQSDYAR NKLSPRHGSQ YDEGDCVKLE  300
LHKSNKSTER CYDFTKGRCH RGSSCRYVHH EVSSHGGWST RDEAREKTYD RRDLNASLGG  360
RIESRRVSDT PCKYFAEGRC RRGEDCKFSH QDVPHEHLEG RPGDNSMIYN LGIGDGSSRI  420
SSNWSDQTTA INVTNSSQWI SNDGAGIAVP QSVDRVDSGQ KPQYSQSQNP EGGNCQIVAQ  480
EASQKASTSQ EEKITEENSG QHQIPTVSAQ QTADRAYSIK DEMFSCEKNG TTVASNARPQ  540
AEMNSASNLS TVVSIAGQSF SQDGQSQYMG PQPFHAQSFT PNAQFQQIVP PLPFSGQLQQ  600
LYPMTSNGQS QFRVHSALLN TQNFNLSMHN QPVHLGQNKQ NYNPGGQTQQ NLNLPPPQTG  660
QSQQNFQVLQ SLPPPQSGPS QQNFNLSGQI QYTVPPFSGQ NQQNNSLNGQ NHQSLPPPQN  720
GPSNQNVHLL APDGQSQYAT PQPANALSFN SEEKSLQTSS ENTGREGINQ NTDESEKKSL  780
PLCSDTPVAH KVVTSEQAAR ITDLSASLAQ FFHNSGLPPS QLFPPSSVRP PANPAAPFLQ  840
PSEGSWTQSH VPTSDIMQPI KSETGNLPSG FSSNSTEQKD PKMVETQTHL ESMIPVSVTD  900
GTDGNPSKGV NLKEKQQHGN HNPMQVELSV DTASKKVNEI ETGQIKKEQA AHLEDLDADM  960
RTDGESKRSK EIKGIRLFKC SLVEYVKDIL KPTWKEGHLS KEAHKTIVKK VVDKVTGAMQ  1020
GPNIPQTQEK IDLYLLHSKT KLNRLVQAYV EKYVKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	189	RSRSRSRSRSR
2	181	189	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906741.1	0.0	zinc finger CCCH domain-containing protein 55 isoform X2
TrEMBL	A0A3Q0IFH4	0.0	A0A3Q0IFH4_PHODC; zinc finger CCCH domain-containing protein 55-like isoform X1
STRING	XP_008809119.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-15	C3H family protein