PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906504.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 381aa    MW: 39740.1 Da    PI: 5.2473
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906504.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.7e-17298331134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C   kTp+WR gp g+ktLCnaCG++y++ +
  XP_010906504.1 298 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 331
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-16292342IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.857292328IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-14296355No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14296329IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.03E-13297344No hitNo description
PfamPF003201.3E-14298331IPR000679Zinc finger, GATA-type
PROSITE patternPS003440298323IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAMAAKKYVD DATMAQPVDV MCGDLFDHID DLLDFPNEDD VPGMDDYQCG PAPPAPAPGF  60
TPLLPSLQAD GLLGGGGRGG GGDSTDGSGD GAGGAASAFH REEGKLVPWD DLDIAEAELG  120
WLSNFFDDND SFTADFPKCG TTIGANYSNS NSGKSEEDSL FRTSSPVSVL EPNSLSIGGS  180
GGGASSSSSS CSGTGGGNSG ARAQDALPIS HPEPILVVPA RARSKRPRPA TFSRPHVTIP  240
FLPPSSDSIP VASSSSQSES FGESNPGPAT MTQKKNKTKK SSAGTAAGGD EAPPVRKCMH  300
CEIQKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPDLHS NSHKKVVEMR  360
IKASQASKDS CDLLAYIRRR E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581GGRGGGG
2224228KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019702217.10.0GATA transcription factor 8 isoform X1
TrEMBLA0A2H3YY251e-147A0A2H3YY25_PHODC; GATA transcription factor 4-like
STRINGXP_008805201.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-39GATA family protein