PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906354.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family YABBY
Protein Properties Length: 175aa    MW: 19485.3 Da    PI: 10.2626
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906354.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY171.26.7e-532014924170
           YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118
                     vsvP + l+++vtvrCGhCt+llsvn+    q+ + ++  +  +           ++++++   ++++ +++  ++++++++++ +p     + P
  XP_010906354.1  20 VSVPGNNLLNIVTVRCGHCTNLLSVNMGGLLQTAPLQDL-QVVG-----------SQDYRKECGSSSKCNRTSVMYSMQNDQQQTLP-----VPP 97 
                     9****************************9999998883.3322...........22333333333333333445567888888888.....569 PP

           YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PekrqrvPsaynrfi+eeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_010906354.1  98 PEKRQRVPSAYNRFIREEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 149
                     **************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.5E-5820149IPR006780YABBY protein
SuperFamilySSF470951.7E-885142IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-598143IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MIRLVLRKPS TIILGLHGKV SVPGNNLLNI VTVRCGHCTN LLSVNMGGLL QTAPLQDLQV  60
VGSQDYRKEC GSSSKCNRTS VMYSMQNDQQ QTLPVPPPEK RQRVPSAYNR FIREEIQRIK  120
ANNPDISHRE AFSTAAKNWA HFPHIHFGLN MDGNKQVKFD EAIAGPGGQK AQSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906354.21e-128LOW QUALITY PROTEIN: protein YABBY 2
SwissprotQ10FZ78e-62YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2H3Z9S21e-103A0A2H3Z9S2_PHODC; protein YABBY 2-like isoform X1
STRINGXP_008810626.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.15e-57YABBY family protein