PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905948.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 387aa    MW: 43362.1 Da    PI: 8.2078
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905948.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.6e-1197140245
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     +++k+ rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  XP_010905948.1  97 PADKVLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQEL 140
                     689****************************9777777666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-892142No hitNo description
SMARTSM003382.7E-896159IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.01398142IPR004827Basic-leucine zipper domain
PfamPF001708.8E-898140IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-7100142No hitNo description
CDDcd147087.41E-22100152No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
PfamPF141441.5E-31187261IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMELYLGYLE DNFYHLKLSP NSMSSASAQF ATSRRMGIYE PNHQISMWGD SFKADSSQNT  60
GASTIVEADA KHDNRLGDIP RESSGPSKKY DQEAHKPADK VLRRLAQNRE AARKSRLRKK  120
AYVQQLESSR LKLSQLEQEL ERARQQGVYV GGHLGDSTLG LSGTVNSGVA AFEMEYGHWV  180
EEQNRQTCEL RTALQAHVSD IELRMLVESG MSHYDNLFRI KAIAAKSDVF YLMSGMWKTS  240
AERFFLWIGG FRPSELLKVL SPQLDPLTEQ QVVAVCNLQQ SSQQAEDALS QGMDKLQQTL  300
AETLTSDPLG ASGVANYMGQ MANAMGKLEA LVSFVNQADH LRQQTLQQMY KILTTRQAAR  360
GLLALGDYFQ RLRALSSLWA ARPREPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905948.10.0transcription factor TGA4 isoform X1
RefseqXP_029117024.10.0transcription factor TGA4 isoform X1
SwissprotQ392371e-172TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2H3YN860.0A0A2H3YN86_PHODC; transcription factor TGA4-like isoform X1
STRINGXP_008801018.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-164bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]