PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905694.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 849aa    MW: 96812.2 Da    PI: 7.1392
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905694.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.4e-21151244190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ ++++++k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  XP_010905694.1 151 EFYCTFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGFPQAKQSDDSKLQRNRKSSRCGCQAYMRIVKRAdfdIPEWRVTGFSNVHNHELL 244
                     6***************999887455667********************9*******************99887676689*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.7E-25882IPR001623DnaJ domain
SuperFamilySSF465651.57E-231184IPR001623DnaJ domain
SMARTSM002712.9E-251169IPR001623DnaJ domain
PROSITE profilePS5007621.1181277IPR001623DnaJ domain
PfamPF002265.1E-241274IPR001623DnaJ domain
CDDcd062573.51E-221266IPR001623DnaJ domain
PRINTSPR006253.3E-191432IPR001623DnaJ domain
PRINTSPR006253.3E-193247IPR001623DnaJ domain
PRINTSPR006253.3E-194969IPR001623DnaJ domain
PRINTSPR006253.3E-196988IPR001623DnaJ domain
PfamPF031012.3E-18151244IPR004330FAR1 DNA binding domain
PfamPF105512.8E-22367458IPR018289MULE transposase domain
PROSITE profilePS509669.347643679IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-7650676IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4654681IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MQNPSRPAMH RNPYDVLGVS RFCSSLEIKV AYRKLALRYH PDKNVDDPEA SEHFKEVSYS  60
YTILSDPERR RRYDNAGLEA SNLSSSLSIT DKASENPGLV IDASDTSTDL SSKDVDSIDE  120
TPEDTILSKQ TSVNLVPFIG QRFVSQDAAY EFYCTFAKQC GFSIRRHRTR GKDGVGRGIT  180
RRDFTCHRGG FPQAKQSDDS KLQRNRKSSR CGCQAYMRIV KRADFDIPEW RVTGFSNVHN  240
HELLKSNQVH HLPAYCTISA DDKSRICMFA KAGMSVRQML RLMELEKGVK LGCLPFTEID  300
VRNLLRSFKN VDRDHDAIDL LVMCKKFKDE DPNFKYEFKI DGHNRLEHIA WSYASSVQLY  360
EAFGDAVVFD TIHRVDAYDM LLGIWIGVDN HGMNCFFGCV LLRDENMQSF SWALKTFLGF  420
MKGKAPQTIL TDQNMWLKEA ISVEMPNTKH AFCIWHIIAK FSDWFSVLLG SRYDNWKAEF  480
HRLYTMDVVE EFEVEWKEMV NAYALHTNKH IASLYALRTF WALPYLRCYF FAGMTSTVHS  540
ESVNAFIQQF LSAQSQLDHF VEQVAVILDS KDQVVAKQKS QRKPNKICLK TGSPIESHAA  600
SVLTPYAFCK LQEELVLAPQ YASFPIEDGC FLVRHHKQVD GGCKVIWAPQ EELISCSCHH  660
FEFTGILCRH VLRILSTNNC FHIPDEYLPI RWRCINMPLT RCSRTALREH AERVHLLQSL  720
VSTLLAESVE SEERLEIASE QVATVLSRIR EFPGSTHGMN GTAYGSPSES LIIPEVEDSD  780
GIIRSFAAGQ THESCTLGKL KERRARDGVE MSRKRRHYPT PCCGRFGNDA NDCPMMGTEG  840
LNGDDLGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vso_A3e-1614771375Yeast dnaJ protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905694.10.0protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2H3Z3S90.0A0A2H3Z3S9_PHODC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRINGXP_008807776.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]