PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905635.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 308aa    MW: 33009.1 Da    PI: 8.2523
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905635.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.79.6e-4471061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv kll++l++ +reda++sl+yeAear+rdPvyG+vg i+ lq++l+q++++l 
  XP_010905635.1   7 PCAACKFLRRKCTQGCVFAPYFPPDQPQKFANVHRVFGASNVAKLLNELSPAQREDAVNSLAYEAEARLRDPVYGCVGYISLLQHKLKQVQHDLY 101
                     7********************************************************************************************99 PP

          DUF260  96 llkee 100
                      +k+e
  XP_010905635.1 102 NAKKE 106
                     98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2016107IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-447104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ GCVFAPYFPP DQPQKFANVH RVFGASNVAK LLNELSPAQR  60
EDAVNSLAYE AEARLRDPVY GCVGYISLLQ HKLKQVQHDL YNAKKELSAY IGPAALGSFL  120
PHAGHHHHHQ AALVGGAHHH HQYLHLQGAS PSSAPPFGVP GMGIGMGLGL AAGGGTAASP  180
HHAQMLMREQ QQQQMAEAQQ MAVAVAAVRE QEMLRSYEQQ QQEFARFGAA YAADGRGFNQ  240
MVGGGATVAV AAGQPSALAL VSPQPIETTP FLVQQQQPQP QPQQYAEQPQ QQQRAGSDEG  300
RRGIGPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-5141108114LOB family transfactor Ramosa2.1
5ly0_B9e-5141108114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701995.10.0LOB domain-containing protein 36
SwissprotQ9FKZ35e-66LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A3Q0I7371e-132A0A3Q0I737_PHODC; LOB domain-containing protein 6-like
STRINGXP_008792635.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-67ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]