PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 212aa MW: 23472.5 Da PI: 9.4117 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.2 | 8.5e-66 | 33 | 186 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 + + ++e+vCyv+CnfCntilavsvP + l+++vtvrCGhCt+llsvn + q++a ++ ++++ +++e ++ +++ ++++s XP_010905004.1 33 SAQITTEHVCYVHCNFCNTILAVSVPGNNLLNIVTVRCGHCTNLLSVNTSGLLQTVALQDL--------QAHNVGSQEYRMECGSSSK-CNRASL 118 567899******************************************9999998888774........3445555544444433322.223322 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ n+++++p p i+PP+krqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+i fgl XP_010905004.1 119 MH-SML-NDQQQTP---P-IHPPQKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHINFGL 186 22.233.3344443...4.99***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.2E-70 | 37 | 186 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.88E-8 | 127 | 179 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.9E-5 | 135 | 180 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKSSSQLKSA IASSSSLAHV HGTLFGTRDR KMSAQITTEH VCYVHCNFCN TILAVSVPGN 60 NLLNIVTVRC GHCTNLLSVN TSGLLQTVAL QDLQAHNVGS QEYRMECGSS SKCNRASLMH 120 SMLNDQQQTP PIHPPQKRQR VPSAYNRFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP 180 HINFGLNLNG NKQVNLDDTI DAPGGQKSQR FH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116808.1 | 1e-149 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 3e-76 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3X4B6 | 1e-117 | A0A2H3X4B6_PHODC; protein YABBY 2-like | ||||
STRING | XP_008778120.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-69 | YABBY family protein |