PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010904916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27435.1 Da PI: 8.898 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 37 | 128 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++r+kC+ +C la yfpae++++f vhk+FG sn++k+lka++ re a+++l++eAe+r dP G+++ +++l+++ + l+ XP_010904916.1 37 ACAACKHQRKKCTGNCELASYFPAERTREFGLVHKVFGISNLTKMLKAIDSIPdRELAVETLTWEAEWRNIDPSVGCYNEVMRLKHENAVLR 128 7************************************************77655******************************99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.11 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-29 | 37 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MQRNISHPPQ PLPPPPGPAP APVAGAGAGA GHGGHQACAA CKHQRKKCTG NCELASYFPA 60 ERTREFGLVH KVFGISNLTK MLKAIDSIPD RELAVETLTW EAEWRNIDPS VGCYNEVMRL 120 KHENAVLRDV IRRCGNCSRL RLPPPYHPPL PPPKRHPANG DHHNNGGGNL MHDNEGINNN 180 NGNIENLINN GAVVAMVPQQ MINHPVNHGN LINGNRDHLS PMYMPPLENG NGGQRNIGHG 240 ALYLPNHIRR T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-17 | 33 | 123 | 7 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-17 | 33 | 123 | 7 | 96 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010904916.1 | 0.0 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A2H3ZU24 | 1e-85 | A0A2H3ZU24_PHODC; LOB domain-containing protein 12-like | ||||
STRING | XP_008784488.1 | 1e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-24 | LOB domain-containing protein 2 |